BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007E06LP1|AL425708
(608 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1189 0.0
>3x_Contig1611
Length = 15286
Score = 1189 bits (597), Expect = 0.0
Identities = 603/607 (99%)
Strand = Plus / Minus
Query: 1 atctgtagaatttggagcctttagmcacgtctgtgcctgcgacatattttaaggaatatc 60
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 5743 atctgtagaatttggagcctttagccgcgtctgtgcctgcgacatattttaaggaatatc 5684
Query: 61 tacgtgtctcgtatttccatttctagtactggatgatcaacctgtaaaaagtagcatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5683 tacgtgtctcgtatttccatttctagtactggatgatcaacctgtaaaaagtagcatgta 5624
Query: 121 cctgtccgtatttacctgcttggacgtcggttattttccctcatttatcttctgactacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5623 cctgtccgtatttacctgcttggacgtcggttattttccctcatttatcttctgactacg 5564
Query: 181 tgattatcttggcggaagagtcaaccaaatacggactaatactgcacaaaaagccatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 tgattatcttggcggaagagtcaaccaaatacggactaatactgcacaaaaagccatctc 5504
Query: 241 tacgttgtatctttgtgtcttatctttcactcttaatcccttgcaggaatttgtatacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 tacgttgtatctttgtgtcttatctttcactcttaatcccttgcaggaatttgtatacca 5444
Query: 301 ataagccctgaactgagatgagcggctgctagtgggttaactccacgttttcatgtcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 ataagccctgaactgagatgagcggctgctagtgggttaactccacgttttcatgtcttc 5384
Query: 361 ttttcttccagatgagagtyatatgatatctgttggttaaacagcttgtctaagtaccgg 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 ttttcttccagatgagagttatatgatatctgttggttaaacagcttgtctaagtaccgg 5324
Query: 421 tttaatgcattctctgtctctgattgatcactttttttctctcttttgtccgtatcgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 tttaatgcattctctgtctctgattgatcactttttttctctcttttgtccgtatcgttt 5264
Query: 481 ctacgccagckgcatggcactacgatgatgcaggtttgccaaaaataaaaacgaattaaa 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 ctacgccagctgcatggcactacgatgatgcaggtttgccaaaaataaaaacgaattaaa 5204
Query: 541 tatgttgggggaatgaaagacatgacgcagaataacctgtaccaatggatacgtatatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 tatgttgggggaatgaaagacatgacgcagaataacctgtaccaatggatacgtatatat 5144
Query: 601 atatata 607
|||||||
Sbjct: 5143 atatata 5137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7540
Number of Sequences: 1807
Number of extensions: 7540
Number of successful extensions: 1246
Number of sequences better than 1.0e-20: 1
length of query: 608
length of database: 10,358,551
effective HSP length: 16
effective length of query: 592
effective length of database: 10,329,639
effective search space: 6115146288
effective search space used: 6115146288
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)